Publications of Francesco Ciompi

Accepted or to appear

  1. S. Balocco, F. Ciompi, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Assessment Of Intra-coronary Stent Location And Extension In Intravascular Ultrasound Sequences", Medical Physics. Abstract/PDF DOI PMID


2018

  1. K. Chung, F. Ciompi, J.M. Scholten, E. Th. Goo, M. Prokop, C. Jacobs, B. van Ginneken and C.M. Schaefer-Prokop. "Visual Discrimination of Screen-detected Persistent from Transient Subsolid Nodules: an Observer Study", PLoS One 2018;13:e0191874. Abstract/PDF DOI PMID

  2. J.-P. Charbonnier, K. Chung, E.T. Scholten, E.M. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi. "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Nature Scientific Reports 2018;8:646. Abstract/PDF DOI PMID

  3. M. Silva, M. Prokop, C. Jacobs, G. Capretti, N. Sverzellati, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, C. Galeone, A. Marchianò and U. Pastorino. "Long-term Active Surveillance of Screening Detected Subsolid Nodules is a Safe Strategy to Reduce Overtreatment", Journal of Thoracic Oncology 2018;13:1454-1463. Abstract/PDF DOI PMID

  4. M. Silva, C.M. Schaefer-Prokop, C. Jacobs, G. Capretti, F. Ciompi, B. van Ginneken, U. Pastorino and N. Sverzellati. "Detection of Subsolid Nodules in Lung Cancer Screening: Complementary Sensitivity of Visual Reading and Computer-Aided Diagnosis.", Investigative Radiology 2018;53(8):441-449. Abstract/PDF DOI PMID

  5. D. Tellez, M. Balkenhol, I. Otte-Holler, R. van de Loo, R. Vogels, P. Bult, C. Wauters, W. Vreuls, S. Mol, N. Karssemeijer, G. Litjens, J. van der Laak and F. Ciompi. "Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks", IEEE Transactions on Medical Imaging 2018;37(9):2126 - 2136. Abstract/PDF DOI PMID


2017

  1. S.J. van Riel, F. Ciompi, M.M. Winkler Wille, A. Dirksen, S. Lam, E.T. Scholten, S.E. Rossi, N. Sverzellati, M. Naqibullah, R. Wittenberg, M.C. Hovinga-de Boer, M. Snoeren, L. Peters-Bax, O. Mets, M. Brink, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of pulmonary nodules in screening CTs: Comparison between a computer model and human observers", PLoS One 2017;12:e0185032. Abstract/PDF DOI PMID

  2. K. Chung, C. Jacobs, E.T. Scholten, J.M. Goo, H. Prosch, N. Sverzellati, F. Ciompi, O.M. Mets, P.K. Gerke, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Lung-RADS Category 4X: Does It Improve Prediction of Malignancy in Subsolid Nodules?", Radiology 2017;284(1):264-271. Abstract/PDF DOI PMID

  3. S.J. van Riel, F. Ciompi, C. Jacobs, M.M. Winkler Wille, E.T. Scholten, M. Naqibullah, S. Lam, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of screen-detected nodules at baseline CT: comparison of the PanCan model, Lung-RADS and NCCN guidelines", European Radiology 2017;27(10):4019-4029. Abstract/PDF DOI PMID

  4. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi. "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis 2017;36:52-60. Abstract/PDF DOI PMID

  5. F. Ciompi, K. Chung, S.J. van Riel, A.A.A. Setio, P.K. Gerke, C. Jacobs, E.T. Scholten, C.M. Schaefer-Prokop, M.M.W. Wille, A. Marchiano, U. Pastorino, M. Prokop and B. van Ginneken. "Towards automatic pulmonary nodule management in lung cancer screening with deep learning", Nature Scientific Reports 2017(46479). Abstract/PDF DOI arXiv PMID

  6. G. Litjens, T. Kooi, B. Ehteshami Bejnordi, A.A.A. Setio, F. Ciompi, M. Ghafoorian, J. van der Laak, B. van Ginneken and C. Sánchez. "A Survey on Deep Learning in Medical Image Analysis", Medical Image Analysis 2017;42:60-88. Abstract/PDF DOI arXiv PMID


2016

  1. A.A.A. Setio, F. Ciompi, G. Litjens, P. Gerke, C. Jacobs, S. van Riel, M.W. Wille, M. Naqibullah, C. Sánchez and B. van Ginneken. "Pulmonary nodule detection in CT images: false positive reduction using multi-view convolutional networks", IEEE Transactions on Medical Imaging 2016;35(5):1160-1169. Abstract/PDF DOI PMID

  2. J. Charbonnier, M. Brink, F. Ciompi, E. Scholten, C. Schaefer-Prokop and E. van Rikxoort. "Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching.", IEEE Transactions on Medical Imaging 2016:882-92. Abstract/PDF DOI PMID

  3. F. Ciompi, S. Balocco, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Computer-aided detection of intracoronary stent in intravascular ultrasound sequences.", Medical physics 2016;43:5616. Abstract/PDF DOI PMID


2015

  1. F. Ciompi, B. de Hoop, S.J. van Riel, K. Chung, E.T. Scholten, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box", Medical Image Analysis 2015;26:195-202. Abstract/PDF DOI PMID

  2. F. Ciompi, C. Jacobs, E. Scholten, M. Winkler Wille, P. de Jong, M. Prokop and B. van Ginneken. "Bag of frequencies: a descriptor of pulmonary nodules in Computed Tomography images", IEEE Transactions on Medical Imaging 2015;34:1-12. Abstract/PDF DOI PMID


2014

  1. C. Gatta and F. Ciompi. "Stacked sequential scale-space taylor context", IEEE Transactions on Pattern Analysis and Machine Intelligence 2014;36(8):1694-1700. Abstract/PDF

  2. F. Ciompi, O. Pujol and P. Radeva. "ECOC-DRF: Discriminative Random Fields based on Error-Correcting Output Codes", Pattern Recognition 2014;47:2193-2204. Abstract/PDF DOI

  3. S. Balocco, C. Gatta, F. Ciompi, A. Wahle, P. Radeva, S. Carlier, G. Unal, E. Sanidas, J. Mauri, X. Carillo, T. Kovarnik, C.-W. Wang, H.-C. Chen, T.P. Exarchos, D.I. Fotiadis, F. Destrempes, G. Cloutier, O. Pujol, M. Alberti, E.G. Mendizabal-Ruiz, M. Rivera, T. Aksoy, R.W. Downe and I.A. Kakadiaris. "Standardized evaluation methodology and reference database for evaluating IVUS image segmentation", Computerized Medical Imaging and Graphics 2014;38:70-90. Abstract/PDF DOI PMID


2012

  1. M. Alberti, S. Balocco, C. Gatta, F. Ciompi, O. Pujol, J. Silva, X. Carrillo and P. Radeva. "Automatic bifurcation detection in coronary IVUS sequences", IEEE Transactions on Biomedical Engineering 2012;59:1022-1031. Abstract/PDF DOI PMID

  2. F. Ciompi, O. Pujol, C. Gatta, M. Alberti, S. Balocco, X. Carrillo, J. Mauri-Ferre and P. Radeva. "HoliMAb: A holistic approach for Media--Adventitia border detection in intravascular ultrasound", Medical Image Analysis 2012. Abstract/PDF URL


2011

  1. X. Carrillo, E. Fernandez-Nofrerias, F. Ciompi, O. Rodriguez-Leor, P. Radeva, N. Salvatella, O. Pujol, J. Mauri and A. Bayes-Genis. "Changes in radial artery volume assessed using intravascular ultrasound: a comparison of two vasodilator regimens in transradial coronary interventions", Journal of invasive cardiology 2011;23:401-404. Abstract URL

  2. J. Seabra, F. Ciompi, O. Pujol, J. Mauri, P. Radeva and J. Sanches. "Rayleigh mixture model for plaque characterization in intravascular ultrasound", IEEE Transactions on Biomedical Engineering 2011;58:1314-1324. Abstract/PDF URL


2010

  1. F. Ciompi, O. Pujol, C. Gatta, O. Rodriguez-Leor, J. Mauri-Ferre and P. Radeva. "Fusing in-vitro and in-vivo intravascular ultrasound data for plaque characterization", International Journal of Cardiac Imaging 2010;26:763-779. Abstract/PDF URL